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Subject: IOC v2.2 taxonomy list NEEDED
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davek User is Offline Posts:14 Moderate Poster
12/01/2009 4:07 PM Alert 

I've been a LONGGG-time user of Birder's Diary for many years... and I really love it... however, I am finally at the point of my LIFELIST that I no longer can accept the CLEMENTS taxonomy... it's just not up-to-date on a world basis anymore... and it's so sad.

I am deciding that I need to move my LIFELIST to the IOC v2.2, but as best as I can tell... BD does not offer this taxonomy. That's really sad for me and I am not sure what I am going to do... as I would hate to leave Birder's Diary...

I even have Birder's Diary listed on the LINKS page of my website for years, along with my Birder's Diary-created LIFELISTS available for all to see how cool Birder's Diary is.

Are there realistic plans that IOC list will be supported by BD in the (near) future?

Thanks Jeff... for a GREAT  program.

best

Dave

  http://www.birdingpix.com/

 

jjones User is Offline Posts:5332 Veteran Member
12/01/2009 5:04 PM Alert 

Hi Dave,

Thanks for bringing this up and thanks for all the kudos and your lifelong devotion to BD!

I think I am confused on this matter however. I thought the IOC was simply a standard for English names for all birds of the world - not a true taxonomy. And in that sense, I can't imagine that any world-based taxonomy has any more support and backing (Cornell Univ) and completeness on a world-wide basis than Cornell's Clements taxonomy. I may be wrong on this and please let me know where I am.

I know that SteveO posted a year or so ago asking if anyone was interested in the IOC. It did not generate much response. Steve will probably have more to add on this.

Let's start here...

Jeff


Birder's Diary Technical Support
jjones User is Offline Posts:5332 Veteran Member
12/01/2009 5:05 PM Alert 
p.s. Also Dave, I see that you do not have the latest Clements version. Yours is a couple years old. Clements 6.3.2 is the latest.

fyi

Birder's Diary Technical Support
SteveO User is Offline Posts:521 Veteran Member
12/01/2009 10:54 PM Alert 

Well, IOC is becoming more of a taxonomy, having left their original charter behind.

I follow it and the updates to it - and heve sent in some corrections and notes.

I expect to get to it within the next few months. I just finished updating ABA, AOU and SACC, and need to send them to Jeff by this weekend.

I am one of the reviewers for the new Clements (due out a month ago) and will update 6.3.2 when it is released.

And I want to get a couple reporting enhancements into 3.7.

After that, maybe IOC - but it really does depend on demand.

Hey - anyone else out there really hungry for IOC?

(And I would like to take a try at Taxonomy in Flux - but the update frequency?)


Regards,
Steve
jjones User is Offline Posts:5332 Veteran Member
12/02/2009 12:43 AM Alert 

"Taxonomy in Flux"??

What is that Steve?

Jeff


Birder's Diary Technical Support
SteveO User is Offline Posts:521 Veteran Member
12/02/2009 6:25 AM Alert 
TIF is at http://jboyd.net/Taxo/List.html

To quote from the charter - or mission statement - or whatever it is called now:
Unlike other checklists, this one is based on genetic studies to the highest degree possible. With one or two exceptions, it relies on published studies (including those available “ahead of print”). The strong focus on genetics means that previous morphological studies are often treated as second-class citizens. This is especially true when they aren't consistent with the genetic data, even if the genetic data is somewhat soft. Nonetheless, I rely on such analyses to fill in the gaps left by the genetic data.

My approach contrasts with most checklist committees. They usually put substantial weight on traditional classifications, and which try to avoid speculation, even when its clear that the traditional classification is wrong. In particular, they try to avoid making erronenous changes, and put a premium on stability.

The purpose of this checklist is speculation. I'm trying to map out potential changes in the taxonomy. The price of this is giving up stability. I try to avoid erroneously maintaining the status quo, and try to keep abreast of the latest findings, even if incomplete.


Regards,
Steve
davek User is Offline Posts:14 Moderate Poster
12/03/2009 6:14 PM Alert 
Jeff, Steve...

THANKS for the responses and updates on where BD is with IOC.

I would certainly commit to purchasing an upgrade if and when you offered IOC taxonomy. As a world birder, this is really the only taxonomy which is up-to-date. Unfortunately, Clements...as much as I respect it... has sadly fallen out-of-date for world birders. (That's partially why I guess I havent even bothered to get your latest updates... since I knew nothing much would change in the species that I needed to add).

For example: ROYAL ALBATROSS is listed in Clements, yet I saw both the Southern Royal Albatross and Northern Royal Albatross.
(and upgrading wouldn't solve this listing issue). There are of course other examples where Clements is a bit behind in some splits etc.

So I guess I am kinda stuck... and as my LIFELIST grows... I am having to keep a separate record of common names and scientific names ...etc... which I have seen, yet unable to capture into BD (at least not easily without my own tax mods... which I am not very interested in doing... thats why I buy BD... so I don't have to create these myself!)

Thanks for your thoughts.

I'd love it if you implemented IOC.

Dave

jjones User is Offline Posts:5332 Veteran Member
12/03/2009 7:16 PM Alert 

Hi Dave,

Thanks for the details on what you feel to be the shortcomings currently in Clements. Let me make sure I understand those that you mention, and just update me when you get a chance. This will help me understand what might need to change in BD in order to provide more needed functionality.

As for the Royal Albatross, Clements has both the southern (D. epomophora epomophora) and northern (D. e. sanfordi) in the tax list - Clements just considers them, and therefore classifies them, as subspecies. You can certainly record your sightings of each against the subspecies. Of course, when using Clements to generate your life count, then each of these sightings only count as 'one species seen'. Is that what is causing you the most angst? You can certainly modify the tax list and elevate each to species status. But, the only effect this would have is that of elevating your life count by one. It wouldn't change your sightings whether you did this or whether you had the IOC tax list in BD.

Now - also, I not sure I understand the impact of what you mean by '...I am having to keep a separate record of common names and scientific names, etc, which I have seen, yet unable to capture into BD...'. I don't understand why this is the case. Can you give an example please? As above in the albatross example, you can record your sightings of those things - Clements just considers them to be subspecies - but you can still record sightings against them and so on as with any thing in BD.

Let me know when you get a chance please,

Jeff


Birder's Diary Technical Support
SteveO User is Offline Posts:521 Veteran Member
12/04/2009 12:08 AM Alert 

I just want to clarify one point - even though no one asked.

Creating a taxonomy list is fairly easy - BD is set up to do it.

The problem is the research. In order to make sightings flow from one tax list to another, each entry in a list must point to the corect taxon (Jeff likes to call them "things").

In your example, the taxa for the Southern and Northern Royal Albatross are already recognized in Clements - just not with the correct names and not as full species. As a result, the IOC checklist entries for those species need to point to the same underlying taxa, so if anyone has ticked them in Clements they will get credit when using the IOC list.

I have seen Tax lists where any taxon with an new name was added as a new entry - so sighting were not reported on different tax lsists. I have made a couple of those mistakes, and I have learned to do the research.

I took a look at IOC today, and spent a few minutes matching on Common and binomial names. There are a little over 700 entries where a diirect match to Clements (the most complete and up-to-date list we currently support) is not possible. The good news is that is less than ten percent of the entries.

The bad news is that resolving the 700 will take some time.  Some will be easy, but a few will take more effort to resolve.


Regards,
Steve
SteveO User is Offline Posts:521 Veteran Member
12/17/2009 10:24 PM Alert 
IOC 2.3 will be out in the next few days (On or about the 21st of December).

When I wrap up Clements 6.4, IOC 2.3 is the next list on my list.

Regards,
Steve
jjones User is Offline Posts:5332 Veteran Member
12/18/2009 9:09 AM Alert 

You are one brave soul!

But many folks are thanking you ahead of time.

Jeff


Birder's Diary Technical Support
SteveO User is Offline Posts:521 Veteran Member
12/18/2009 12:02 PM Alert 
The problem is, of course, that there will be more new entities that will have to be mapped.

First in Clements, then in IOC


Regards,
Steve
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